tigeR
tigeR is an R package designed for the analysis of gene expression in tumor immunotherapy.
1.Introduction
- 1060 samples with immunotherapy clinical information from a total of 11 melanoma datasets, 3 lung cancer datasets, 2 kidney cancer datasets, 1 gastric cancer dataset, 1 low-grade glioma dataset, 1 glioblastoma dataset and 1 Head and Neck Squamous data set (all organized into R language ‘SummarizedExperiment’ objects).
Overall design of tigeR
2.Installation
install.packages(c("devtools", "ggplot2", "pROC"))
devtools::install_github(“Chengxugorilla/tigeR”)
3.Quick Start
The workflow of tigeR is below, see more details in tigeR documentation.
workflow of tigeR
