tigeR

tigeR is an R package designed for the analysis of gene expression in tumor immunotherapy.

1.Introduction

  • 1060 samples with immunotherapy clinical information from a total of 11 melanoma datasets, 3 lung cancer datasets, 2 kidney cancer datasets, 1 gastric cancer dataset, 1 low-grade glioma dataset, 1 glioblastoma dataset and 1 Head and Neck Squamous data set (all organized into R language ‘SummarizedExperiment’ objects).

Overall design of tigeR

2.Installation

install.packages(c("devtools", "ggplot2", "pROC")) devtools::install_github(“Chengxugorilla/tigeR”)

3.Quick Start

The workflow of tigeR is below, see more details in tigeR documentation.

workflow of tigeR

4.TIGER web server

http://tiger.canceromics.org/#/